Plot function for alpha_estimates class

# S3 method for alpha_estimates
plot(
  x,
  physeq = NULL,
  measure = NULL,
  color = NULL,
  shape = NULL,
  title = NULL,
  trim_plot = FALSE,
  ...
)

Arguments

x	Object of class `alpha_estimates`.
physeq	(Optional). Default `NULL`. Required object of class `phyloseq` if including a `sample_data` variable for `color` or `shape`.
measure	(Optional). If there are multiple richness measures included in `x`, this can be set to the the desired measure to be plotted. Defaults to the measure of the first alpha diversity estimate.
color	(Optional). Default `NULL`. The sample variable to map to different colors. Can be a single character string of the variable name in `sample_data` or a custom supplied vector with length equal to the number of samples.
shape	(Optional). Default `NULL`. The sample variable to map to different shapes. Can be a single character string of the variable name in `sample_data` or a custom supplied vector with length equal to the number of samples.
title	(Optional). Default NULL. Character string. The main title for the graphic.
trim_plot	(Optional). Default `FALSE`. Boolean indicator for whether you want the plot to include the full confidence intervals.
...	See details

Details

... does not currently have any implemented options. Optional arguments currently include "trim_plot", a Optional

Examples

if (FALSE) {
library(phyloseq)
data(GlobalPatterns)
alphas <- breakaway(GlobalPatterns)
plot(alphas)
}